Contact Information

Department of Human and Social Sciences

University of Bergamo

Piazzale S. Agostino 2

24129 Bergamo (BG)

immagine13

2022

Riva SG, Cazzaniga P, Nobile MS, Spolaor S, Rundo L, Besozzi D, Tangherloni A. SMGen: A generator of synthetic models of biochemical reaction networks. Symmetry, 14(1): 119.
DOI: 10.3390/sym14010119

 

Castelli M, Manzoni L, Mariot L, Nobile MS, Tangherloni A. Salp Swarm Optimization: a Critical Review. Expert Systems with Applications, 189: 116029. DOI: 10.1016/j.eswa.2021.116029

 

 

2021

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Tangherloni A, Nobile MS, Cazzaniga P, Capitoli G, Spolaor S, Rundo L, Mauri G, Besozzi D. FiCoS: a fine- and coarse-grained GPU-powered deterministic simulator for biochemical networks. PLoS Computational Biology, 17(9): e1009410. DOI: 10.1371/journal.pcbi.1009410

Tangherloni A, Ricciuti F, Besozzi D, Liò P, Cvejic A. Analysis of single-cell RNA sequencing data based on autoencoders. BMC Bioinformatics, 22(1): 309.
DOI: 10.1186/s12859-021-04150-3

Rundo L*, Tangherloni A*, Cazzaniga P, Mistri M, Galimberti S, Woitek R, Sala E, Mauri G, Nobile MS. A CUDA-powered method for the feature extraction and unsupervised analysis of medical images. The Journal of Supercomputing. DOI: 10.1007/s11227-020-03565-8 (* equal contribution) 

Ranzoni AM*, Tangherloni A*, Berest I, Riva SG, Myers B, Strzelecka PM, Xu J, Panada E, Mohorianu I, Zaugg JB, Cvejic A. Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis. Cell Stem Cell. DOI: 10.1016/j.stem.2020.11.015 (* equal contribution)

2020

Rundo L*, Tangherloni A*, Tyson DR*, Betta R, Militello C, Spolaor S, Nobile MS, Besozzi D, Lubbock ALR, Quaranta V, Mauri G, Lopez CF, Cazzaniga P. ACDC: Automated cell detection and counting for time-lapse fluorescence microscopy. Applied Sciences, 10(18), 6187. DOI: 10.3390/app10186187 (* equal contribution)

 

Besozzi D, Manzoni L, Nobile MS, Spolaor S, Castelli M, Vanneschi L, Cazzaniga P, Ruberto S, Rundo L, Tangherloni A. Computational Intelligence for Life Sciences. Fundamenta Informaticae, 171(1-4), 57-80.
DOI: 10.3233/FI-2020-1872 

 

2019

 

Tangherloni A, Spolaor S, Cazzaniga P, Besozzi D, Rundo L, Mauri G, Nobile MS. Biochemical parameter estimation vs. benchmark functions: A comparative study of optimization performance and representation design. Applied Soft Computing, 81: 105494.
DOI: 10.1016/j.asoc.2019.105494

Rundo L*, Tangherloni A*, Cazzaniga P, Nobile MS, Russo G, Gilardi MC, Vitabile S, Mauri G, Besozzi D, Militello C. A novel framework for MR image segmentation and quantification by using MedGA. Computer Methods and Programs in Biomedicine, 176(1): 59-172.
DOI: 10.1016/j.cmpb.2019.04.016 (* equal contribution)

Rundo L*, Tangherloni A*, Nobile MS, Militello C, Besozzi D, Mauri G, Cazzaniga P. MedGA: A Novel Evolutionary Method for Medical Image Enhancement in Medical Imaging Systems. Expert Systems with Applications, 119: 387-399. DOI: 10.1016/j.eswa.2018.11.013
(* equal contribution)

Tangherloni A, Spolaor S, Rundo L, Nobile MS, Cazzaniga P, Mauri G, Liò P, Merelli I, Besozzi D. GenHap: A Novel Computational Method Based on Genetic Algorithms for Haplotype Assembly. BMC Bioinformatics, 20(4): 172. DOI: 10.1186/s12859-019-2691-y

Rundo L, Han C, Nagano Y, Zhang J, Hataya R, Militello C, Tangherloni A, Nobile MS, Ferretti C, Besozzi D, Gilardi MC, Vitabile S, Mauri G, Nakayama H, Cazzaniga P. USE-Net: Incorporating Squeeze-and-Excitation blocks into U-Net for prostate zonal segmentation of multi-institutional MRI datasets. Neurocomputing, 365: 31-43.
DOI: 10.1016/j.neucom.2019.07.006

2018

Rundo L, Militello C, Tangherloni A, Russo G, Vitabile S, Gilardi MC, Mauri G. NeXt for neuro‐radiosurgery: A fully automatic approach for necrosis extraction in brain tumor MRI using an unsupervised machine learning technique. International Journal of Imaging Systems and Technology, 28(1): 21-37. DOI: 10.1002/ima.22253

2017

Tangherloni A, Nobile MS, Besozzi D, Mauri G, Cazzaniga P. LASSIE: simulating large-scale models of biochemical systems on GPUs. BMC Bioinformatics, 18(1): 246.
DOI: 10.1186/s12859-017-1666-0

 

Tangherloni A, Nobile MS, Cazzaniga P, Besozzi D, Mauri G. Gillespie’s Stochastic Simulation Algorithm on MIC Coprocessor. The Journal of Supercomputing, 73(2): 676-686. DOI: 10.1007/s11227-016-1778-8

Nobile MS, Cazzaniga P, Tangherloni A, Besozzi D. Graphics Processing Units in Bioinformatics, Computational Biology and Systems Biology. Briefings in Bioinformatics, 18(5): 870-885. DOI: 10.1093/bib/bbw058

Journal papers

andrea.tangherloni@unibg.it

andrea.tangherloni@arubapec.it

+39 035 2052933


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